CollectRrbsMetrics.CollectRrbsMetricsReferenceArgumentCollection (picard 2.18.2 API)

Skip navigation links

All Classes

SEARCH:

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- picard.analysis.CollectRrbsMetrics.CollectRrbsMetricsReferenceArgumentCollection

All Implemented Interfaces:: ReferenceArgumentCollection

Enclosing class:: CollectRrbsMetrics

public static class CollectRrbsMetrics.CollectRrbsMetricsReferenceArgumentCollection
extends Object
implements ReferenceArgumentCollection

- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  File REFERENCE
- Constructor Summary
  
  Constructors
  Constructor Description
  
  CollectRrbsMetricsReferenceArgumentCollection()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  File getReferenceFile()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - REFERENCE
```
@Argument(doc="The reference sequence fasta file",
          shortName="R")
public File REFERENCE
```
- Constructor Detail
  - CollectRrbsMetricsReferenceArgumentCollection
```
public CollectRrbsMetricsReferenceArgumentCollection()
```
- Method Detail
  - getReferenceFile
```
public File getReferenceFile()
```
    Specified by:
    
    getReferenceFile in interface ReferenceArgumentCollection
    
    Returns:
    
    The reference provided by the user, if any, or the default, if any.

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method