IntervalArgumentCollectionpublic static class CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection extends Object implements IntervalArgumentCollection
| Constructor | Description |
|---|---|
CollectWgsMetricsIntervalArgumentCollection() |
@Argument(doc="An interval list file that contains the positions to restrict the assessment. Please note that all bases of reads that overlap these intervals will be considered, even if some of those bases extend beyond the boundaries of the interval. The ideal use case for this argument is to use it to restrict the calculation to a subset of (whole) contigs.",
optional=true)
public File INTERVALS
public CollectWgsMetricsIntervalArgumentCollection()
public File getIntervalFile()
getIntervalFile in interface IntervalArgumentCollection