GcBiasUtils (picard 2.18.2 API)

java.lang.Object
- picard.analysis.GcBiasUtils

```
public class GcBiasUtils
extends Object
```
Utilities to calculate GC Bias Created by kbergin on 9/23/15.

Constructor Summary

Constructors
Constructor Description

GcBiasUtils()

Constructors
Constructor	Description
`GcBiasUtils()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static byte[]`	`calculateAllGcs(byte[] refBases, int lastWindowStart, int windowSize)`
`static int`	`calculateGc(byte[] bases, int startIndex, int endIndex, picard.analysis.GcBiasUtils.CalculateGcState state)`
`static int[]`	`calculateRefWindowsByGc(int windows, File referenceSequence, int windowSize)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- GcBiasUtils
```
public GcBiasUtils()
```

Method Detail

calculateGc

public static int calculateGc(byte[] bases,
                              int startIndex,
                              int endIndex,
                              picard.analysis.GcBiasUtils.CalculateGcState state)

calculateRefWindowsByGc

public static int[] calculateRefWindowsByGc(int windows,
                                            File referenceSequence,
                                            int windowSize)

calculateAllGcs

public static byte[] calculateAllGcs(byte[] refBases,
                                     int lastWindowStart,
                                     int windowSize)

Class GcBiasUtils

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

GcBiasUtils

Method Detail

calculateGc

calculateRefWindowsByGc

calculateAllGcs