public final class RrbsCpgDetailMetrics extends MultilevelMetrics
| Modifier and Type | Field | Description |
|---|---|---|
Integer |
CONVERTED_SITES |
Number of times this CpG site was converted (TG for + strand, CA for - strand)
|
Double |
PCT_CONVERTED |
CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)
|
Integer |
POSITION |
Position within the sequence of the CpG site
|
String |
SEQUENCE_NAME |
Sequence the CpG is seen in
|
Integer |
TOTAL_SITES |
Number of times this CpG site was encountered
|
LIBRARY, READ_GROUP, SAMPLE| Constructor | Description |
|---|---|
RrbsCpgDetailMetrics() |
public String SEQUENCE_NAME
public Integer POSITION
public Integer TOTAL_SITES
public Integer CONVERTED_SITES
public Double PCT_CONVERTED