WgsMetricsProcessor (picard 2.18.2 API)

All Known Implementing Classes:

WgsMetricsProcessorImpl
```
public interface WgsMetricsProcessor
```
Interface for processing data and generate result for CollectWgsMetrics

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`addToMetricsFile(htsjdk.samtools.metrics.MetricsFile<CollectWgsMetrics.WgsMetrics,Integer> file, boolean includeBQHistogram, CountingFilter dupeFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter)`	Adds result metric's data to input file
`void`	`processFile()`	Method processes the input data and accumulates result data

Method Detail

processFile
```
void processFile()
```
Method processes the input data and accumulates result data

addToMetricsFile

void addToMetricsFile(htsjdk.samtools.metrics.MetricsFile<CollectWgsMetrics.WgsMetrics,Integer> file,
                      boolean includeBQHistogram,
                      CountingFilter dupeFilter,
                      CountingFilter mapqFilter,
                      CountingPairedFilter pairFilter)

Adds result metric's data to input file

Parameters:: file - MetricsFile for result of collector's work; includeBQHistogram - include base quality histogram; dupeFilter - counting filter for duplicate reads; mapqFilter - counting filter for mapping quality; pairFilter - counting filter for reads without a mapped mate pair

Interface WgsMetricsProcessor

Method Summary

Method Detail

processFile

addToMetricsFile