GeneAnnotationReader (picard 2.18.2 API)

java.lang.Object
- picard.annotation.GeneAnnotationReader

```
public class GeneAnnotationReader
extends Object
```
Load gene annotations into an OverlapDetector of Gene objects. Currently only refFlat format is accepted.

Constructor Summary

Constructors
Constructor Description

GeneAnnotationReader()

Constructors
Constructor	Description
`GeneAnnotationReader()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static htsjdk.samtools.util.OverlapDetector<Gene>`	`loadRefFlat(File refFlatFile, htsjdk.samtools.SAMSequenceDictionary sequenceDictionary)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- GeneAnnotationReader
```
public GeneAnnotationReader()
```

Method Detail

loadRefFlat

public static htsjdk.samtools.util.OverlapDetector<Gene> loadRefFlat(File refFlatFile,
                                                                     htsjdk.samtools.SAMSequenceDictionary sequenceDictionary)

Class GeneAnnotationReader

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

GeneAnnotationReader

Method Detail

loadRefFlat