ClusteredCrosscheckMetric (picard 2.18.2 API)

Skip navigation links

All Classes

SEARCH:

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- htsjdk.samtools.metrics.MetricBase
- - picard.fingerprint.CrosscheckMetric
  - - picard.fingerprint.ClusteredCrosscheckMetric

```
public class ClusteredCrosscheckMetric
extends CrosscheckMetric
```
A metric class to hold the result of ClusterCrosscheckMetrics fingerprints.

Nested Class Summary
- Nested classes/interfaces inherited from class picard.fingerprint.CrosscheckMetric
  CrosscheckMetric.DataType, CrosscheckMetric.FingerprintResult

Field Summary

Fields
Modifier and Type	Field	Description
`Integer`	`CLUSTER`	The cluster identifier to which the two groups within this metric (`CrosscheckMetric.LEFT_GROUP_VALUE` and `CrosscheckMetric.RIGHT_GROUP_VALUE`) belong.
`Integer`	`CLUSTER_SIZE`	The number of different groups that are assigned to this cluster.

Fields inherited from class picard.fingerprint.CrosscheckMetric
DATA_TYPE, LEFT_FILE, LEFT_GROUP_VALUE, LEFT_LANE, LEFT_LIBRARY, LEFT_MOLECULAR_BARCODE_SEQUENCE, LEFT_RUN_BARCODE, LEFT_SAMPLE, LOD_SCORE, LOD_SCORE_NORMAL_TUMOR, LOD_SCORE_TUMOR_NORMAL, RESULT, RIGHT_FILE, RIGHT_GROUP_VALUE, RIGHT_LANE, RIGHT_LIBRARY, RIGHT_MOLECULAR_BARCODE_SEQUENCE, RIGHT_RUN_BARCODE, RIGHT_SAMPLE

Constructor Summary

Constructors
Constructor Description

ClusteredCrosscheckMetric()

ClusteredCrosscheckMetric(CrosscheckMetric metric)

Method Summary
- Methods inherited from class htsjdk.samtools.metrics.MetricBase
  equals, hashCode, toString
- Methods inherited from class java.lang.Object
  clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Field Detail
  - CLUSTER
```
public Integer CLUSTER
```
    The cluster identifier to which the two groups within this metric (CrosscheckMetric.LEFT_GROUP_VALUE and CrosscheckMetric.RIGHT_GROUP_VALUE) belong.
  - CLUSTER_SIZE
```
public Integer CLUSTER_SIZE
```
    The number of different groups that are assigned to this cluster. Should be the same value for all rows within the same CLUSTER.
- Constructor Detail
  - ClusteredCrosscheckMetric
```
public ClusteredCrosscheckMetric()
```
  - ClusteredCrosscheckMetric
```
public ClusteredCrosscheckMetric(CrosscheckMetric metric)
```

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method