CrosscheckMetric (picard 2.18.2 API)

java.lang.Object
- htsjdk.samtools.metrics.MetricBase
- - picard.fingerprint.CrosscheckMetric

Direct Known Subclasses:

ClusteredCrosscheckMetric
```
public class CrosscheckMetric
extends htsjdk.samtools.metrics.MetricBase
```
A class to hold the result of crosschecking fingerprints. The same metric will be used for crosschecking Readgroups, libraries, samples, or files.

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class CrosscheckMetric.DataType

static class CrosscheckMetric.FingerprintResult

Nested Classes
Modifier and Type	Class	Description
`static class`	`CrosscheckMetric.DataType`
`static class`	`CrosscheckMetric.FingerprintResult`

Field Summary

Fields
Modifier and Type	Field	Description
`CrosscheckMetric.DataType`	`DATA_TYPE`
`String`	`LEFT_FILE`
`String`	`LEFT_GROUP_VALUE`
`Integer`	`LEFT_LANE`
`String`	`LEFT_LIBRARY`
`String`	`LEFT_MOLECULAR_BARCODE_SEQUENCE`
`String`	`LEFT_RUN_BARCODE`
`String`	`LEFT_SAMPLE`
`Double`	`LOD_SCORE`
`Double`	`LOD_SCORE_NORMAL_TUMOR`
`Double`	`LOD_SCORE_TUMOR_NORMAL`
`CrosscheckMetric.FingerprintResult`	`RESULT`
`String`	`RIGHT_FILE`
`String`	`RIGHT_GROUP_VALUE`
`Integer`	`RIGHT_LANE`
`String`	`RIGHT_LIBRARY`
`String`	`RIGHT_MOLECULAR_BARCODE_SEQUENCE`
`String`	`RIGHT_RUN_BARCODE`
`String`	`RIGHT_SAMPLE`

Constructor Summary

Constructors
Constructor Description

CrosscheckMetric()

Constructors
Constructor	Description
`CrosscheckMetric()`

Method Summary
- Methods inherited from class htsjdk.samtools.metrics.MetricBase
  equals, hashCode, toString
- Methods inherited from class java.lang.Object
  clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

LEFT_GROUP_VALUE
```
public String LEFT_GROUP_VALUE
```

RIGHT_GROUP_VALUE
```
public String RIGHT_GROUP_VALUE
```

RESULT

public CrosscheckMetric.FingerprintResult RESULT

DATA_TYPE

public CrosscheckMetric.DataType DATA_TYPE

LOD_SCORE
```
public Double LOD_SCORE
```

LOD_SCORE_TUMOR_NORMAL
```
public Double LOD_SCORE_TUMOR_NORMAL
```

LOD_SCORE_NORMAL_TUMOR
```
public Double LOD_SCORE_NORMAL_TUMOR
```

LEFT_RUN_BARCODE
```
public String LEFT_RUN_BARCODE
```

LEFT_LANE
```
public Integer LEFT_LANE
```

LEFT_MOLECULAR_BARCODE_SEQUENCE

public String LEFT_MOLECULAR_BARCODE_SEQUENCE

LEFT_LIBRARY
```
public String LEFT_LIBRARY
```

LEFT_SAMPLE
```
public String LEFT_SAMPLE
```

LEFT_FILE
```
public String LEFT_FILE
```

RIGHT_RUN_BARCODE
```
public String RIGHT_RUN_BARCODE
```

RIGHT_LANE
```
public Integer RIGHT_LANE
```

RIGHT_MOLECULAR_BARCODE_SEQUENCE

public String RIGHT_MOLECULAR_BARCODE_SEQUENCE

RIGHT_LIBRARY
```
public String RIGHT_LIBRARY
```

RIGHT_SAMPLE
```
public String RIGHT_SAMPLE
```

RIGHT_FILE
```
public String RIGHT_FILE
```

Constructor Detail
- CrosscheckMetric
```
public CrosscheckMetric()
```

Class CrosscheckMetric

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class htsjdk.samtools.metrics.MetricBase

Methods inherited from class java.lang.Object

Field Detail

LEFT_GROUP_VALUE

RIGHT_GROUP_VALUE

RESULT

DATA_TYPE

LOD_SCORE

LOD_SCORE_TUMOR_NORMAL

LOD_SCORE_NORMAL_TUMOR

LEFT_RUN_BARCODE

LEFT_LANE

LEFT_MOLECULAR_BARCODE_SEQUENCE

LEFT_LIBRARY

LEFT_SAMPLE

LEFT_FILE

RIGHT_RUN_BARCODE

RIGHT_LANE

RIGHT_MOLECULAR_BARCODE_SEQUENCE

RIGHT_LIBRARY

RIGHT_SAMPLE

RIGHT_FILE

Constructor Detail

CrosscheckMetric