IlluminaPhasingMetrics (picard 2.18.2 API)

```
public class IlluminaPhasingMetrics
extends htsjdk.samtools.metrics.MetricBase
```
Metrics for Illumina Basecalling that stores median phasing and prephasing percentages on a per-template-read, per-lane basis. Phasing refers to the fraction of molecules that fall behind or jump ahead (prephasing) during a read cycle. For each lane/template read # (i.e. FIRST, SECOND) combination we will store the median values of both the phasing and prephasing values for every tile in that lane/template read pair.

Fields
Modifier and Type	Field	Description
`long`	`LANE`	Illumina flowcell lane number
`double`	`PHASING_APPLIED`	Median phasing value across all tiles in a lane, applied to the first and second template reads
`double`	`PREPHASING_APPLIED`	Median pre-phasing value across all tiles in a lane, applied to the first and second template reads
`String`	`TYPE_NAME`	Defines an Illumina template read number (first or second)

Constructors
Constructor	Description
`IlluminaPhasingMetrics()`

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static String`	`getExtension()`	This property is not exposed in a field to avoid complications with MetricBase's dependency on reflection.
`static Collection<IlluminaPhasingMetrics>`	`getPhasingMetricsForTiles(long lane, Collection<Tile> tilesForLane, boolean usePercentage)`	Calculate the median phasing & prephasing values for a lane's tiles and create the appropriate IlluminaPhasingMetrics for them

Methods inherited from class htsjdk.samtools.metrics.MetricBase
equals, hashCode, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Class IlluminaPhasingMetrics