PerTileParser (picard 2.18.2 API)

java.lang.Object
- picard.illumina.parser.PerTileParser<ILLUMINA_DATA>

All Implemented Interfaces:

Iterator<ILLUMINA_DATA>

Direct Known Subclasses:

PosParser
```
public abstract class PerTileParser<ILLUMINA_DATA extends picard.illumina.parser.IlluminaData>
extends Object
```
Abstract base class for Parsers that open a single tile file at a time and iterate through them.

Constructor Summary

Constructors
Constructor	Description
`PerTileParser(picard.illumina.parser.IlluminaFileMap tilesToFiles)`
`PerTileParser(picard.illumina.parser.IlluminaFileMap tilesToFiles, int nextTile)`

Method Summary

All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`
`int`	`getTileOfNextCluster()`	Return the tile of the NEXT ILLUMINA_DATA object to be returned by the method next.
`boolean`	`hasNext()`
`protected abstract htsjdk.samtools.util.CloseableIterator<ILLUMINA_DATA>`	`makeTileIterator(File nextTileFile)`	Factory method for the iterator of each tile
`void`	`maybeAdvance()`
`ILLUMINA_DATA`	`next()`
`void`	`remove()`
`void`	`seekToTile(int oneBasedTileNumber)`
`Set<IlluminaDataType>`	`supportedTypes()`	The DataTypes that this parser can provide
`void`	`verifyData(List<Integer> tiles, int[] cycles)`

Methods inherited from interface java.util.Iterator
forEachRemaining

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - PerTileParser
```
public PerTileParser(picard.illumina.parser.IlluminaFileMap tilesToFiles)
```
  - PerTileParser
```
public PerTileParser(picard.illumina.parser.IlluminaFileMap tilesToFiles,
                     int nextTile)
```
- Method Detail
  - makeTileIterator
```
protected abstract htsjdk.samtools.util.CloseableIterator<ILLUMINA_DATA> makeTileIterator(File nextTileFile)
```
    Factory method for the iterator of each tile
  - getTileOfNextCluster
```
public int getTileOfNextCluster()
```
    Return the tile of the NEXT ILLUMINA_DATA object to be returned by the method next. This might force us to advance to the next file (as it will contains the data for the next) tile/ILLUMINA_DATA object.
    
    Returns:
    
    tile number for the next ILLUMINA_DATA object to be returned
  - seekToTile
```
public void seekToTile(int oneBasedTileNumber)
```
  - maybeAdvance
```
public void maybeAdvance()
```
  - next
```
public ILLUMINA_DATA next()
```
    Specified by:
    
    next in interface Iterator<ILLUMINA_DATA extends picard.illumina.parser.IlluminaData>
  - remove
```
public void remove()
```
    Specified by:
    
    remove in interface Iterator<ILLUMINA_DATA extends picard.illumina.parser.IlluminaData>
  - hasNext
```
public boolean hasNext()
```
    Specified by:
    
    hasNext in interface Iterator<ILLUMINA_DATA extends picard.illumina.parser.IlluminaData>
  - close
```
public void close()
```
  - verifyData
```
public void verifyData(List<Integer> tiles,
                       int[] cycles)
```
  - supportedTypes
```
public abstract Set<IlluminaDataType> supportedTypes()
```
    The DataTypes that this parser can provide

Class PerTileParser<ILLUMINA_DATA extends picard.illumina.parser.IlluminaData>

Constructor Summary

Method Summary

Methods inherited from interface java.util.Iterator

Methods inherited from class java.lang.Object

Constructor Detail

PerTileParser

PerTileParser

Method Detail

makeTileIterator

getTileOfNextCluster

seekToTile

maybeAdvance

next

remove

hasNext

close

verifyData

supportedTypes