@DocumentedFeature public class BamIndexStats extends CommandLineProgram
| Modifier and Type | Field | Description |
|---|---|---|
File |
INPUT |
COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, GA4GH_CLIENT_SECRETS, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, referenceSequence, specialArgumentsCollection, TMP_DIR, USE_JDK_DEFLATER, USE_JDK_INFLATER, VALIDATION_STRINGENCY, VERBOSITY| Constructor | Description |
|---|---|
BamIndexStats() |
| Modifier and Type | Method | Description |
|---|---|---|
protected int |
doWork() |
Main method for the program.
|
static void |
main(String[] argv) |
Stock main method for a command line program.
|
customCommandLineValidation, getCommandLine, getCommandLineParser, getDefaultHeaders, getFaqLink, getMetricsFile, getStandardUsagePreamble, getStandardUsagePreamble, getVersion, hasWebDocumentation, instanceMain, instanceMainWithExit, makeReferenceArgumentCollection, parseArgs, requiresReference, setDefaultHeaders, useLegacyParser@Argument(shortName="I",
doc="A BAM file to process.")
public File INPUT
public static void main(String[] argv)
protected int doWork()
doWork in class CommandLineProgram