AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator (picard 2.18.2 API)

java.lang.Object
- picard.sam.markduplicates.util.AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator

Enclosing class:

AbstractMarkDuplicatesCommandLineProgram
```
public static final class AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator
extends Object
```
Little class used to package up a header and an iterable/iterator.

Field Summary

Fields
Modifier and Type Field Description

htsjdk.samtools.SAMFileHeader header

htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord> iterator

Fields
Modifier and Type	Field	Description
`htsjdk.samtools.SAMFileHeader`	`header`
`htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord>`	`iterator`

Constructor Summary

Constructors
Constructor	Description
`SamHeaderAndIterator(htsjdk.samtools.SAMFileHeader header, htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord> iterator)`

Method Summary
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

header

public final htsjdk.samtools.SAMFileHeader header

iterator

public final htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord> iterator

Constructor Detail

SamHeaderAndIterator

public SamHeaderAndIterator(htsjdk.samtools.SAMFileHeader header,
                            htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord> iterator)

Class AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

header

iterator

Constructor Detail

SamHeaderAndIterator