PhysicalLocationForMateCigar (picard 2.18.2 API)

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Summary:
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Method

Detail:
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java.lang.Object
- picard.sam.util.PhysicalLocationInt
- - picard.sam.util.PhysicalLocationShort
  - - picard.sam.markduplicates.util.PhysicalLocationForMateCigar

All Implemented Interfaces:

PhysicalLocation
```
public class PhysicalLocationForMateCigar
extends PhysicalLocationShort
```
Stores the minimal information needed for optical duplicate detection.

Field Summary
- Fields inherited from interface picard.sam.util.PhysicalLocation
  NO_VALUE
- Fields inherited from class picard.sam.util.PhysicalLocationInt
  tile, x, y

Constructor Summary

Constructors
Constructor Description

PhysicalLocationForMateCigar(PhysicalLocation rec)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(Object other)`
`short`	`getLibraryId()`
`short`	`getReadGroup()`
`int`	`hashCode()`
`void`	`setLibraryId(short libraryId)`
`void`	`setReadGroup(short rg)`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface picard.sam.util.PhysicalLocation
hasLocation

Methods inherited from class picard.sam.util.PhysicalLocationInt
getTile, getX, getY, setTile

Methods inherited from class picard.sam.util.PhysicalLocationShort
setX, setY

- Constructor Detail
  - PhysicalLocationForMateCigar
```
public PhysicalLocationForMateCigar(PhysicalLocation rec)
```
- Method Detail
  - getReadGroup
```
public short getReadGroup()
```
    Specified by:
    
    getReadGroup in interface PhysicalLocation
    
    Overrides:
    
    getReadGroup in class PhysicalLocationInt
  - setReadGroup
```
public void setReadGroup(short rg)
```
    Specified by:
    
    setReadGroup in interface PhysicalLocation
    
    Overrides:
    
    setReadGroup in class PhysicalLocationInt
  - getLibraryId
```
public short getLibraryId()
```
    Specified by:
    
    getLibraryId in interface PhysicalLocation
    
    Overrides:
    
    getLibraryId in class PhysicalLocationInt
  - setLibraryId
```
public void setLibraryId(short libraryId)
```
    Specified by:
    
    setLibraryId in interface PhysicalLocation
    
    Overrides:
    
    setLibraryId in class PhysicalLocationInt
  - equals
```
public boolean equals(Object other)
```
    Overrides:
    
    equals in class Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object

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