htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>, Cloneablepublic class RepresentativeReadIndexerCodec extends Object implements htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
| Modifier and Type | Field | Description |
|---|---|---|
protected DataInputStream |
in |
|
protected DataOutputStream |
out |
| Constructor | Description |
|---|---|
RepresentativeReadIndexerCodec() |
| Modifier and Type | Method | Description |
|---|---|---|
htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer> |
clone() |
|
RepresentativeReadIndexer |
decode() |
|
void |
encode(RepresentativeReadIndexer rni) |
|
DataInputStream |
getInputStream() |
|
DataOutputStream |
getOutputStream() |
|
void |
setInputStream(InputStream is) |
|
void |
setOutputStream(OutputStream os) |
protected DataInputStream in
protected DataOutputStream out
public htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer> clone()
clone in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>clone in class Objectpublic void setOutputStream(OutputStream os)
setOutputStream in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>public void setInputStream(InputStream is)
setInputStream in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>public DataInputStream getInputStream()
public DataOutputStream getOutputStream()
public void encode(RepresentativeReadIndexer rni)
encode in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>public RepresentativeReadIndexer decode()
decode in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>