ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection (picard 2.18.2 API)

java.lang.Object
- picard.util.ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection

All Implemented Interfaces:: ReferenceArgumentCollection

Enclosing class:: ScatterIntervalsByNs

public static class ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection
extends Object
implements ReferenceArgumentCollection

- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  File REFERENCE
- Constructor Summary
  
  Constructors
  Constructor Description
  
  ScatterIntervalsByNReferenceArgumentCollection()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  File getReferenceFile()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Fields
Modifier and Type	Field	Description
`File`	`REFERENCE`

Constructors
Constructor	Description
`ScatterIntervalsByNReferenceArgumentCollection()`

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`File`	`getReferenceFile()`

Field Detail

REFERENCE

@Argument(shortName="R",
          doc="Reference sequence to use. Note: this tool requires that the reference fasta has both an associated index and a dictionary.")
public File REFERENCE

Constructor Detail
- ScatterIntervalsByNReferenceArgumentCollection
```
public ScatterIntervalsByNReferenceArgumentCollection()
```

Method Detail
- getReferenceFile
```
public File getReferenceFile()
```
  Specified by:
  
  getReferenceFile in interface ReferenceArgumentCollection
  
  Returns:
  
  The reference provided by the user, if any, or the default, if any.

Class ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

REFERENCE

Constructor Detail

ScatterIntervalsByNReferenceArgumentCollection

Method Detail

getReferenceFile