picard.util

Interfaces

• AdapterPair
• AtomicIterator

Classes

• AbstractInputParser
• AdapterMarker
• AlleleSubsettingUtils
• AsyncIterator
• BaitDesigner
• BasicInputParser
• BedToIntervalList
• CircularByteBuffer
• ClippingUtility
• CsvInputParser
• DbSnpBitSetUtil
• DbSnpBitSetUtil.DbSnpBitSets
• DelimitedTextFileWithHeaderIterator
• FifoBuffer
• GraphUtils
• GraphUtils.Graph
• IlluminaUtil
• IntervalListScatterer
• IntervalListToBed
• IntervalListTools
• Iterators
• LiftOverIntervalList
• LiftoverUtils
• MathUtil
• MathUtil.LogMath
• PropertyUtils
• QuerySortedReadPairIteratorUtil
• QuerySortedReadPairIteratorUtil.ReadPair
• ReflectionUtil
• RExecutor
• ScatterIntervalsByNs
• ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection
• TabbedInputParser
• TabbedTextFileWithHeaderParser
• ThreadPoolExecutorWithExceptions
• UnsignedTypeUtil

Enums

• BaitDesigner.DesignStrategy
• IlluminaUtil.IlluminaAdapterPair
• IntervalListScatterer.Mode
• IntervalListTools.Action
• VariantType