GatherVcfs (picard 2.18.2 API)

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java.lang.Object
- picard.cmdline.CommandLineProgram
- - picard.vcf.GatherVcfs

```
@DocumentedFeature
public class GatherVcfs
extends CommandLineProgram
```
Simple little class that combines multiple VCFs that have exactly the same set of samples and totally discrete sets of loci.

Field Summary

Fields
Modifier and Type Field Description

List<File> INPUT

File OUTPUT
- Fields inherited from class picard.cmdline.CommandLineProgram
  COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, GA4GH_CLIENT_SECRETS, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, referenceSequence, specialArgumentsCollection, TMP_DIR, USE_JDK_DEFLATER, USE_JDK_INFLATER, VALIDATION_STRINGENCY, VERBOSITY

Constructor Summary

Constructors
Constructor Description

GatherVcfs()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected int`	`doWork()`	Do the work after command line has been parsed.
`static void`	`main(String[] args)`

Methods inherited from class picard.cmdline.CommandLineProgram
customCommandLineValidation, getCommandLine, getCommandLineParser, getDefaultHeaders, getFaqLink, getMetricsFile, getStandardUsagePreamble, getStandardUsagePreamble, getVersion, hasWebDocumentation, instanceMain, instanceMainWithExit, makeReferenceArgumentCollection, parseArgs, requiresReference, setDefaultHeaders, useLegacyParser

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - INPUT
```
@Argument(shortName="I",
          doc="Input VCF file(s).")
public List<File> INPUT
```
  - OUTPUT
```
@Argument(shortName="O",
          doc="Output VCF file.")
public File OUTPUT
```
- Constructor Detail
  - GatherVcfs
```
public GatherVcfs()
```
- Method Detail
  - main
```
public static void main(String[] args)
```
  - doWork
```
protected int doWork()
```
    Description copied from class: CommandLineProgram
    
    Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
    
    Specified by:
    
    doWork in class CommandLineProgram
    
    Returns:
    
    program exit status.

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