GenotypeQualityFilter (picard 2.18.2 API)

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java.lang.Object
- picard.vcf.filter.GenotypeQualityFilter

All Implemented Interfaces:

GenotypeFilter
```
public class GenotypeQualityFilter
extends Object
implements GenotypeFilter
```
Genotype filter that filters out genotypes below a given quality threshold.

Constructor Summary

Constructors
Constructor Description

GenotypeQualityFilter(int minGq)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`filter(htsjdk.variant.variantcontext.VariantContext ctx, htsjdk.variant.variantcontext.Genotype gt)`	Test whether or not the genotype should be filtered out.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - GenotypeQualityFilter
```
public GenotypeQualityFilter(int minGq)
```
- Method Detail
  - filter
```
public String filter(htsjdk.variant.variantcontext.VariantContext ctx,
                     htsjdk.variant.variantcontext.Genotype gt)
```
    Description copied from interface: GenotypeFilter
    
    Test whether or not the genotype should be filtered out. If so return a filter string, otherwise return null.
    
    Specified by:
    
    filter in interface GenotypeFilter

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