Field Detail

• wrappedIterator

  protected final CloseableIterator<SAMRecord> wrappedIterator

  The wrapped iterator.

• mNextRecord

  protected SAMRecord mNextRecord

  The next record to be returned. Will be null if no such record exists.

Constructor Detail

• BAMQueryFilteringIterator

  public BAMQueryFilteringIterator​(CloseableIterator<SAMRecord> iterator,
                                   htsjdk.samtools.BAMIteratorFilter iteratorFilter)

Method Detail

• hasNext

  public boolean hasNext()

  Returns true if a next element exists; false otherwise.

• next

  public SAMRecord next()

  Gets the next record from the given iterator.

  Returns:

  The next SAM record in the iterator.