BAMQueryMultipleIntervalsIteratorFilter (htsjdk 2.14.3 API)

java.lang.Object
- htsjdk.samtools.BAMQueryMultipleIntervalsIteratorFilter

```
public class BAMQueryMultipleIntervalsIteratorFilter
extends Object
```
Filters out records that do not match any of the given intervals and query type.

Constructor Summary

Constructors
Constructor Description

BAMQueryMultipleIntervalsIteratorFilter(QueryInterval[] intervals, boolean contained)

Constructors
Constructor	Description
`BAMQueryMultipleIntervalsIteratorFilter(QueryInterval[] intervals, boolean contained)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static htsjdk.samtools.BAMIteratorFilter.IntervalComparison`	`compareIntervalToRecord(QueryInterval interval, SAMRecord record)`
`htsjdk.samtools.BAMIteratorFilter.FilteringIteratorState`	`compareToFilter(SAMRecord record)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BAMQueryMultipleIntervalsIteratorFilter

public BAMQueryMultipleIntervalsIteratorFilter(QueryInterval[] intervals,
                                               boolean contained)

Method Detail

compareToFilter

public htsjdk.samtools.BAMIteratorFilter.FilteringIteratorState compareToFilter(SAMRecord record)

compareIntervalToRecord

public static htsjdk.samtools.BAMIteratorFilter.IntervalComparison compareIntervalToRecord(QueryInterval interval,
                                                                                           SAMRecord record)

Class BAMQueryMultipleIntervalsIteratorFilter

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

BAMQueryMultipleIntervalsIteratorFilter

Method Detail

compareToFilter

compareIntervalToRecord