public class SAMTestUtil extends Object
| Modifier and Type | Class | Description |
|---|---|---|
static class |
SAMTestUtil.SanityCheckFailedException |
Indicates that a required sanity-check condition was not met.
|
| Constructor | Description |
|---|---|
SAMTestUtil() |
| Modifier and Type | Method | Description |
|---|---|---|
void |
assertPairValid(SAMRecord firstEnd,
SAMRecord secondEnd) |
Basic sanity check for a pair of SAMRecords.
|
static void |
assertReadValid(SAMRecord read) |
Basic sanity check for a SAMRecord.
|
public void assertPairValid(SAMRecord firstEnd, SAMRecord secondEnd) throws SAMTestUtil.SanityCheckFailedException
SAMTestUtil.SanityCheckFailedException - if the sanity check failedpublic static void assertReadValid(SAMRecord read) throws SAMTestUtil.SanityCheckFailedException
read - SAM recordIllegalArgumentException - if read is nullSAMTestUtil.SanityCheckFailedException - if errors