SecondaryAlignmentSkippingIterator (htsjdk 2.14.3 API)

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java.lang.Object
- htsjdk.samtools.SecondaryAlignmentSkippingIterator

Direct Known Subclasses:

NotPrimarySkippingIterator
```
public class SecondaryAlignmentSkippingIterator
extends Object
```
Wrapper around SAMRecord iterator that skips over secondary elements. This iterator conflates a filtering iterator and a peekable iterator. It would be cleaner to handle those concerns separately.

- Constructor Summary
  
  Constructors
  Constructor Description
  
  SecondaryAlignmentSkippingIterator(CloseableIterator<SAMRecord> underlyingIt)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  boolean advance()
  
  SAMRecord getCurrent()
  
  boolean hasCurrent()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SecondaryAlignmentSkippingIterator

public SecondaryAlignmentSkippingIterator(CloseableIterator<SAMRecord> underlyingIt)

Method Detail

hasCurrent
```
public boolean hasCurrent()
```

getCurrent
```
public SAMRecord getCurrent()
```

advance
```
public boolean advance()
```

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