CramSpanContainerIterator (htsjdk 2.14.3 API)

java.lang.Object
- htsjdk.samtools.cram.build.CramSpanContainerIterator

All Implemented Interfaces:

Iterator<Container>
```
public class CramSpanContainerIterator
extends Object
implements Iterator<Container>
```
An iterator of CRAM containers read from locations in SeekableStream. The locations are specified with pairs of coordinates, they are basically file pointers as returned for example by SamReader.Indexing.getFilePointerSpanningReads()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static CramSpanContainerIterator`	`fromFileSpan(SeekableStream seekableStream, long[] coordinates)`
`CramHeader`	`getCramHeader()`
`long`	`getFirstContainerOffset()`
`boolean`	`hasNext()`
`Container`	`next()`
`void`	`remove()`

Methods inherited from interface java.util.Iterator
forEachRemaining

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

fromFileSpan

public static CramSpanContainerIterator fromFileSpan(SeekableStream seekableStream,
                                                     long[] coordinates)
                                              throws IOException

Throws:: IOException

hasNext
```
public boolean hasNext()
```
Specified by:

hasNext in interface Iterator<Container>

next
```
public Container next()
```
Specified by:

next in interface Iterator<Container>

remove
```
public void remove()
```
Specified by:

remove in interface Iterator<Container>

getCramHeader
```
public CramHeader getCramHeader()
```

getFirstContainerOffset
```
public long getFirstContainerOffset()
```

Class CramSpanContainerIterator

Method Summary

Methods inherited from interface java.util.Iterator

Methods inherited from class java.lang.Object

Method Detail

fromFileSpan

hasNext

next

remove

getCramHeader

getFirstContainerOffset