Field Detail

• BASES

  public static final byte[] BASES

Constructor Detail

• SubstitutionMatrix

  public SubstitutionMatrix​(long[][] frequencies)

• SubstitutionMatrix

  public SubstitutionMatrix​(byte[] matrix)

Method Detail

• toString

  public String toString()

  Overrides:

  toString in class Object

• getEncodedMatrix

  public byte[] getEncodedMatrix()

• code

  public byte code​(byte refBase,
                   byte readBase)

• base

  public byte base​(byte refBase,
                   byte code)