FastqEncoder (htsjdk 2.14.3 API)

public final class FastqEncoder
extends Object

Codec for encoding records into FASTQ format.

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static FastqRecord`	`asFastqRecord(SAMRecord record)`	Converts a `SAMRecord` into a `FastqRecord`.
`static SAMRecord`	`asSAMRecord(FastqRecord record, SAMFileHeader header)`	Converts a `FastqRecord` into a simple unmapped `SAMRecord`.
`static String`	`encode(FastqRecord record)`	Encodes a FastqRecord in the String FASTQ format.
`static String`	`encode(SAMRecord record)`	Encodes a SAMRecord in the String FASTQ format.
`static Appendable`	`write(Appendable out, FastqRecord record)`	Writes a FastqRecord into the Appendable output.

public static String encode(FastqRecord record)

Encodes a FastqRecord in the String FASTQ format.

public static Appendable write(Appendable out,
                               FastqRecord record)

Writes a FastqRecord into the Appendable output.

public static FastqRecord asFastqRecord(SAMRecord record)

Converts a SAMRecord into a FastqRecord.

public static SAMRecord asSAMRecord(FastqRecord record,
                                    SAMFileHeader header)

Converts a FastqRecord into a simple unmapped SAMRecord.

Class FastqEncoder