FilteringIterator (htsjdk 2.14.3 API)

java.lang.Object
- htsjdk.samtools.filter.FilteringSamIterator
- - htsjdk.samtools.filter.FilteringIterator

All Implemented Interfaces:

CloseableIterator<SAMRecord>, Closeable, AutoCloseable, Iterator<SAMRecord>
```
@Deprecated
public class FilteringIterator
extends FilteringSamIterator
```
Deprecated.
use FilteringSamIterator instead

Filtering Iterator which takes a filter and an iterator and iterates through only those records which are not rejected by the filter.
$Id$

Constructor Summary

Constructors
Constructor	Description
`FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter)`	Deprecated.
`FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter, boolean filterByPair)`	Deprecated.

Method Summary
- Methods inherited from interface htsjdk.samtools.util.CloseableIterator
  stream, toList
- Methods inherited from class htsjdk.samtools.filter.FilteringSamIterator
  close, hasNext, next, remove
- Methods inherited from interface java.util.Iterator
  forEachRemaining
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FilteringIterator

public FilteringIterator(Iterator<SAMRecord> iterator,
                         SamRecordFilter filter,
                         boolean filterByPair)

Deprecated.

FilteringIterator

public FilteringIterator(Iterator<SAMRecord> iterator,
                         SamRecordFilter filter)

Deprecated.

Class FilteringIterator

Constructor Summary

Method Summary

Methods inherited from interface htsjdk.samtools.util.CloseableIterator

Methods inherited from class htsjdk.samtools.filter.FilteringSamIterator

Methods inherited from interface java.util.Iterator

Methods inherited from class java.lang.Object

Constructor Detail

FilteringIterator

FilteringIterator