Constructor Detail

• MappingQualityFilter

  public MappingQualityFilter​(int minimumMappingQuality)

Method Detail

• filterOut

  public boolean filterOut​(SAMRecord record)

  Description copied from interface: SamRecordFilter
  Determines whether a SAMRecord matches this filter

  Specified by:

  filterOut in interface SamRecordFilter

  Parameters:

  record - the SAMRecord to evaluate

  Returns:

  true if the SAMRecord matches the filter, otherwise false

• filterOut

  public boolean filterOut​(SAMRecord first,
                           SAMRecord second)

  Description copied from interface: SamRecordFilter
  Determines whether a pair of SAMRecords matches this filter

  Specified by:

  filterOut in interface SamRecordFilter

  Parameters:

  first - the first SAMRecord to evaluate

  second - the second SAMRecord to evaluate

  Returns:

  true if the pair of records matches filter, otherwise false