AggregateFilter, AlignedFilter, DuplicateReadFilter, FailsVendorReadQualityFilter, InsertSizeFilter, IntervalFilter, IntervalKeepPairFilter, JavascriptSamRecordFilter, MappingQualityFilter, NotPrimaryAlignmentFilter, OverclippedReadFilter, ReadNameFilter, SecondaryAlignmentFilter, SecondaryOrSupplementaryFilter, SolexaNoiseFilter, TagFilter, WholeReadClippedFilterpublic interface SamRecordFilter
| Modifier and Type | Method | Description |
|---|---|---|
boolean |
filterOut(SAMRecord record) |
Determines whether a SAMRecord matches this filter
|
boolean |
filterOut(SAMRecord first,
SAMRecord second) |
Determines whether a pair of SAMRecords matches this filter
|
boolean filterOut(SAMRecord record)
record - the SAMRecord to evaluate