ByteArraySeekableStream (htsjdk 2.14.3 API)

java.lang.Object
- java.io.InputStream
- - htsjdk.samtools.seekablestream.SeekableStream
  - - htsjdk.samtools.seekablestream.ByteArraySeekableStream

All Implemented Interfaces:

Closeable, AutoCloseable
```
public class ByteArraySeekableStream
extends SeekableStream
```
Created by vadim on 23/03/2015.

Field Summary
- Fields inherited from class htsjdk.samtools.seekablestream.SeekableStream
  mark

Constructor Summary

Constructors
Constructor Description

ByteArraySeekableStream(byte[] bytes)

Constructors
Constructor	Description
`ByteArraySeekableStream(byte[] bytes)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`
`boolean`	`eof()`
`String`	`getSource()`
`long`	`length()`
`long`	`position()`
`int`	`read()`
`int`	`read(byte[] b, int off, int len)`
`void`	`seek(long position)`	Seeks the stream to the provided position.

Methods inherited from class java.io.InputStream
read, readAllBytes, readNBytes, skip, transferTo

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from class htsjdk.samtools.seekablestream.SeekableStream
available, mark, markSupported, readFully, reset

- Constructor Detail
  - ByteArraySeekableStream
```
public ByteArraySeekableStream(byte[] bytes)
```
- Method Detail
  - length
```
public long length()
```
    Specified by:
    
    length in class SeekableStream
    
    Returns:
    
    the length of the stream; 0 if not available or empty.
  - position
```
public long position()
              throws IOException
```
    Specified by:
    
    position in class SeekableStream
    
    Returns:
    
    the current byte position of the stream.
    
    Throws:
    
    IOException
  - seek
```
public void seek(long position)
          throws IOException
```
    Description copied from class: SeekableStream
    
    Seeks the stream to the provided position.
    
    Specified by:
    
    seek in class SeekableStream
    
    Throws:
    
    IOException
  - read
```
public int read()
         throws IOException
```
    Specified by:
    
    read in class InputStream
    
    Throws:
    
    IOException
  - read
```
public int read(byte[] b,
                int off,
                int len)
         throws IOException
```
    Specified by:
    
    read in class SeekableStream
    
    Throws:
    
    IOException
  - close
```
public void close()
           throws IOException
```
    Specified by:
    
    close in interface AutoCloseable
    
    Specified by:
    
    close in interface Closeable
    
    Specified by:
    
    close in class SeekableStream
    
    Throws:
    
    IOException
  - eof
```
public boolean eof()
            throws IOException
```
    Specified by:
    
    eof in class SeekableStream
    
    Returns:
    
    true if the stream is already consumed; false otherwise.
    
    Throws:
    
    IOException
  - getSource
```
public String getSource()
```
    Specified by:
    
    getSource in class SeekableStream
    
    Returns:
    
    String representation of source (e.g. URL, file path, etc.), or null if not available.

Class ByteArraySeekableStream

Field Summary

Fields inherited from class htsjdk.samtools.seekablestream.SeekableStream

Constructor Summary

Method Summary

Methods inherited from class java.io.InputStream

Methods inherited from class java.lang.Object

Methods inherited from class htsjdk.samtools.seekablestream.SeekableStream

Constructor Detail

ByteArraySeekableStream

Method Detail

length

position

seek

read

read

close

eof

getSource