CustomGzipOutputStream (htsjdk 2.14.3 API)

java.lang.Object
- java.io.OutputStream
- - java.io.FilterOutputStream
  - - java.util.zip.DeflaterOutputStream
    - - java.util.zip.GZIPOutputStream
      - htsjdk.samtools.util.CustomGzipOutputStream

All Implemented Interfaces:

Closeable, Flushable, AutoCloseable
```
public class CustomGzipOutputStream
extends GZIPOutputStream
```
Hacky little class used to allow us to set the compression level on a GZIP output stream which, for some bizarre reason, is not exposed in the standard API.

Field Summary
- Fields inherited from class java.util.zip.DeflaterOutputStream
  buf, def
- Fields inherited from class java.io.FilterOutputStream
  out
- Fields inherited from class java.util.zip.GZIPOutputStream
  crc

Constructor Summary

Constructors
Constructor	Description
`CustomGzipOutputStream(OutputStream outputStream, int compressionLevel)`
`CustomGzipOutputStream(OutputStream outputStream, int bufferSize, int compressionLevel)`

Method Summary
- Methods inherited from class java.util.zip.DeflaterOutputStream
  close, deflate, flush, write
- Methods inherited from class java.io.FilterOutputStream
  write
- Methods inherited from class java.util.zip.GZIPOutputStream
  finish, write
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CustomGzipOutputStream

public CustomGzipOutputStream(OutputStream outputStream,
                              int bufferSize,
                              int compressionLevel)
                       throws IOException

Throws:: IOException

CustomGzipOutputStream

public CustomGzipOutputStream(OutputStream outputStream,
                              int compressionLevel)
                       throws IOException

Throws:: IOException

Class CustomGzipOutputStream

Field Summary

Fields inherited from class java.util.zip.DeflaterOutputStream

Fields inherited from class java.io.FilterOutputStream

Fields inherited from class java.util.zip.GZIPOutputStream

Constructor Summary

Method Summary

Methods inherited from class java.util.zip.DeflaterOutputStream

Methods inherited from class java.io.FilterOutputStream

Methods inherited from class java.util.zip.GZIPOutputStream

Methods inherited from class java.lang.Object

Constructor Detail

CustomGzipOutputStream

CustomGzipOutputStream