Constructor Detail

• SimpleFeature

  public SimpleFeature​(String contig,
                       int start,
                       int end)

Method Detail

• getContig

  public String getContig()

  Description copied from interface: Locatable
  Gets the contig name for the contig this is mapped to. May return null if there is no unique mapping.

  Specified by:

  getContig in interface Locatable

  Returns:

  name of the contig this is mapped to, potentially null

• getStart

  public int getStart()

  Specified by:

  getStart in interface Locatable

  Returns:

  1-based start position, undefined if getContig() == null

• getEnd

  public int getEnd()

  Specified by:

  getEnd in interface Locatable

  Returns:

  1-based closed-ended position, undefined if getContig() == null