TribbleException (htsjdk 2.14.3 API)

Skip navigation links

All Classes

SEARCH:

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- java.lang.Throwable
- - java.lang.Exception
  - - java.lang.RuntimeException
    - - htsjdk.tribble.TribbleException

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

TribbleException.CorruptedIndexFile, TribbleException.FeatureFileDoesntExist, TribbleException.InternalCodecException, TribbleException.InvalidDecodeLine, TribbleException.InvalidHeader, TribbleException.MalformedFeatureFile, TribbleException.TabixReaderFailure, TribbleException.UnableToCreateCorrectIndexType, TribbleException.UnableToReadIndexFile
```
public class TribbleException
extends RuntimeException
```
See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`static class`	`TribbleException.CorruptedIndexFile`
`static class`	`TribbleException.FeatureFileDoesntExist`
`static class`	`TribbleException.InternalCodecException`
`static class`	`TribbleException.InvalidDecodeLine`
`static class`	`TribbleException.InvalidHeader`
`static class`	`TribbleException.MalformedFeatureFile`
`static class`	`TribbleException.TabixReaderFailure`
`static class`	`TribbleException.UnableToCreateCorrectIndexType`
`static class`	`TribbleException.UnableToReadIndexFile`

Constructor Summary

Constructors
Constructor Description

TribbleException(String msg)

TribbleException(String message, Throwable throwable)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`getMessage()`	override the default message with ours, which attaches the source file in question
`void`	`setSource(String source)`	set the source for the file; where we got lines from

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from class java.lang.Throwable
addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

- Constructor Detail
  - TribbleException
```
public TribbleException(String msg)
```
  - TribbleException
```
public TribbleException(String message,
                        Throwable throwable)
```
- Method Detail
  - setSource
```
public void setSource(String source)
```
    set the source for the file; where we got lines from
    
    Parameters:
    
    source - the source location, usually a file though it could be a http link or other source
  - getMessage
```
public String getMessage()
```
    override the default message with ours, which attaches the source file in question
    
    Overrides:
    
    getMessage in class Throwable
    
    Returns:
    
    a string with our internal error, along with the causitive source file (or other input source)

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method