Constructor Detail

• Exon2

  public Exon2​(int start,
               int end,
               int codingStart,
               int codingDne)

Method Detail

• setMrnaBase

  public void setMrnaBase​(int base)

• getAminoAcidNumber

  public int getAminoAcidNumber​(int genomeCoordinate)

• setUTR

  public void setUTR​(boolean utr)

  Flag indicating that the entire exon is the UTR.

  Parameters:

  utr -

• setCodingStart

  public void setCodingStart​(int codingStart)

  Method description

  Parameters:

  codingStart -

• setCodingEnd

  public void setCodingEnd​(int codingEnd)

  Method description

  Parameters:

  codingEnd -

• setReadingFrame

  public void setReadingFrame​(int offset)

  Method description

  Parameters:

  offset -

• setPhase

  public void setPhase​(int phase)

  Method description

  Parameters:

  phase -

• getCdStart

  public int getCdStart()

  Method description

  Returns:

• getCdEnd

  public int getCdEnd()

  Method description

  Returns:

• getCodingLength

  public int getCodingLength()

  Method description

  Returns:

• getValueString

  public String getValueString​(double position)

  Method description

  Returns:

• getNumber

  public int getNumber()

• setNumber

  public void setNumber​(int number)