Serializable, Comparator<VariantContext>public class VariantContextComparator extends Object implements Comparator<VariantContext>, Serializable
| Constructor | Description |
|---|---|
VariantContextComparator(SAMSequenceDictionary dictionary) |
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VariantContextComparator(Collection<VCFContigHeaderLine> headerLines) |
Creates a VariantContextComparator from the given VCF contig header lines.
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VariantContextComparator(List<String> contigs) |
| Modifier and Type | Method | Description |
|---|---|---|
int |
compare(VariantContext firstVariantContext,
VariantContext secondVariantContext) |
|
static List<String> |
getSequenceNameList(SAMSequenceDictionary dictionary) |
|
boolean |
isCompatible(Collection<VCFContigHeaderLine> headerLines) |
Returns true if the given header lines are from a file sorted according to this VariantContextComparator.
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equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLongpublic VariantContextComparator(Collection<VCFContigHeaderLine> headerLines)
public VariantContextComparator(SAMSequenceDictionary dictionary)
public static List<String> getSequenceNameList(SAMSequenceDictionary dictionary)
public int compare(VariantContext firstVariantContext, VariantContext secondVariantContext)
compare in interface Comparator<VariantContext>public boolean isCompatible(Collection<VCFContigHeaderLine> headerLines)