FilteringIterator (htsjdk 2.14.3 API)

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java.lang.Object
- htsjdk.variant.variantcontext.filter.FilteringVariantContextIterator
- - htsjdk.variant.variantcontext.filter.FilteringIterator

All Implemented Interfaces:

CloseableIterator<VariantContext>, Closeable, AutoCloseable, Iterable<VariantContext>, Iterator<VariantContext>
```
@Deprecated
public class FilteringIterator
extends FilteringVariantContextIterator
```
Deprecated.
since 2/29/16 use FilteringVariantContextIterator instead

A filtering iterator for VariantContexts that takes a base iterator and a VariantContextFilter. The iterator returns all the variantcontexts for which the filter's function "test" returns true (and only those)

- Constructor Summary
  
  Constructors
  Constructor Description
  
  FilteringIterator(Iterator<VariantContext> iterator, VariantContextFilter filter)
  Deprecated.
- Method Summary
  - Methods inherited from interface htsjdk.samtools.util.CloseableIterator
    stream, toList
  - Methods inherited from class htsjdk.variant.variantcontext.filter.FilteringVariantContextIterator
    close, hasNext, iterator, next, remove
  - Methods inherited from interface java.lang.Iterable
    forEach, spliterator
  - Methods inherited from interface java.util.Iterator
    forEachRemaining
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FilteringIterator

public FilteringIterator(Iterator<VariantContext> iterator,
                         VariantContextFilter filter)

Deprecated.

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