FilteringVariantContextIterator (htsjdk 2.14.3 API)

java.lang.Object
- htsjdk.variant.variantcontext.filter.FilteringVariantContextIterator

All Implemented Interfaces:

CloseableIterator<VariantContext>, Closeable, AutoCloseable, Iterable<VariantContext>, Iterator<VariantContext>

Direct Known Subclasses:

FilteringIterator
```
public class FilteringVariantContextIterator
extends Object
implements CloseableIterator<VariantContext>, Iterable<VariantContext>
```
A filtering iterator for VariantContexts that takes a base iterator and a VariantContextFilter. The iterator returns all the variantcontexts for which the filter's function "test" returns true (and only those)

Constructor Summary

Constructors
Constructor	Description
`FilteringVariantContextIterator(Iterator<VariantContext> iterator, VariantContextFilter filter)`	Constructor of an iterator based on the provided iterator and predicate.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`	Should be implemented to close/release any underlying resources.
`boolean`	`hasNext()`	Returns true if the iteration has more elements.
`Iterator<VariantContext>`	`iterator()`	function to satisfy the Iterable interface
`VariantContext`	`next()`	Returns the next element in the iteration.
`void`	`remove()`	Required method for Iterator API.

Methods inherited from interface htsjdk.samtools.util.CloseableIterator
stream, toList

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Methods inherited from interface java.util.Iterator
forEachRemaining

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - FilteringVariantContextIterator
```
public FilteringVariantContextIterator(Iterator<VariantContext> iterator,
                                       VariantContextFilter filter)
```
    Constructor of an iterator based on the provided iterator and predicate. The resulting records will be all those VariantContexts from iterator for which filter.test( . ) is true
    
    Parameters:
    
    iterator - the backing iterator
    
    filter - the filter
- Method Detail
  - close
```
public void close()
```
    Description copied from interface: CloseableIterator
    
    Should be implemented to close/release any underlying resources.
    
    Specified by:
    
    close in interface AutoCloseable
    
    Specified by:
    
    close in interface Closeable
    
    Specified by:
    
    close in interface CloseableIterator<VariantContext>
  - hasNext
```
public boolean hasNext()
```
    Returns true if the iteration has more elements.
    
    Specified by:
    
    hasNext in interface Iterator<VariantContext>
    
    Returns:
    
    true if the iteration has more elements. Otherwise returns false.
  - next
```
public VariantContext next()
                    throws NoSuchElementException
```
    Returns the next element in the iteration.
    
    Specified by:
    
    next in interface Iterator<VariantContext>
    
    Returns:
    
    the next element in the iteration
    
    Throws:
    
    NoSuchElementException - if there are no more elements to return
  - remove
```
public void remove()
```
    Required method for Iterator API.
    
    Specified by:
    
    remove in interface Iterator<VariantContext>
    
    Throws:
    
    UnsupportedOperationException - since it is unsupported here.
  - iterator
```
public Iterator<VariantContext> iterator()
```
    function to satisfy the Iterable interface
    
    Specified by:
    
    iterator in interface Iterable<VariantContext>
    
    Returns:
    
    itself since the class inherits from Iterator

Class FilteringVariantContextIterator

Constructor Summary

Method Summary

Methods inherited from interface htsjdk.samtools.util.CloseableIterator

Methods inherited from interface java.lang.Iterable

Methods inherited from interface java.util.Iterator

Methods inherited from class java.lang.Object

Constructor Detail

FilteringVariantContextIterator

Method Detail

close

hasNext

next

remove

iterator