BCF2FieldWriter.GTWriter (htsjdk 2.14.3 API)

java.lang.Object
- htsjdk.variant.variantcontext.writer.BCF2FieldWriter
- - htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
  - - htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GTWriter

Enclosing class:: BCF2FieldWriter

public static class BCF2FieldWriter.GTWriter
extends BCF2FieldWriter.GenotypesWriter

Nested Class Summary
- Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
  BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Constructor Summary

Constructors
Constructor Description

GTWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)

Constructors
Constructor	Description
`GTWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)`
`void`	`start(BCF2Encoder encoder, VariantContext vc)`

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
done, getField, getFieldEncoder, getHeader, toString

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
numElements

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GTWriter

public GTWriter(VCFHeader header,
                BCF2FieldEncoder fieldEncoder)

Method Detail

start

public void start(BCF2Encoder encoder,
                  VariantContext vc)
           throws IOException

Overrides:: start in class BCF2FieldWriter.GenotypesWriter
Throws:: IOException

addGenotype

public void addGenotype(BCF2Encoder encoder,
                        VariantContext vc,
                        Genotype g)
                 throws IOException

Overrides:: addGenotype in class BCF2FieldWriter.GenotypesWriter
Throws:: IOException

Class BCF2FieldWriter.GTWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

Constructor Summary

Method Summary

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter

Methods inherited from class java.lang.Object

Constructor Detail

GTWriter

Method Detail

start

addGenotype