BCF2FieldWriter.IntegerTypeGenotypesWriter (htsjdk 2.14.3 API)

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Summary:
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Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- htsjdk.variant.variantcontext.writer.BCF2FieldWriter
- - htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
  - - htsjdk.variant.variantcontext.writer.BCF2FieldWriter.IntegerTypeGenotypesWriter

Enclosing class:: BCF2FieldWriter

public static class BCF2FieldWriter.IntegerTypeGenotypesWriter
extends BCF2FieldWriter.GenotypesWriter

- Nested Class Summary
  - Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
    BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter
- Constructor Summary
  
  Constructors
  Constructor Description
  
  IntegerTypeGenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  void start(BCF2Encoder encoder, VariantContext vc)
  - Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
    done, getField, getFieldEncoder, getHeader, toString
  - Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
    addGenotype, numElements
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

IntegerTypeGenotypesWriter

public IntegerTypeGenotypesWriter(VCFHeader header,
                                  BCF2FieldEncoder fieldEncoder)

Method Detail

start

public void start(BCF2Encoder encoder,
                  VariantContext vc)
           throws IOException

Overrides:: start in class BCF2FieldWriter.GenotypesWriter
Throws:: IOException

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