BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.SiteWriterpublic abstract class BCF2FieldWriter extends Object
| Modifier and Type | Class | Description |
|---|---|---|
static class |
BCF2FieldWriter.FTGenotypesWriter |
|
static class |
BCF2FieldWriter.GenericSiteWriter |
|
static class |
BCF2FieldWriter.GenotypesWriter |
|
static class |
BCF2FieldWriter.GTWriter |
|
static class |
BCF2FieldWriter.IGFGenotypesWriter |
|
static class |
BCF2FieldWriter.IntegerTypeGenotypesWriter |
|
static class |
BCF2FieldWriter.SiteWriter |
|
static class |
BCF2FieldWriter.StaticallyTypeGenotypesWriter |
| Modifier | Constructor | Description |
|---|---|---|
protected |
BCF2FieldWriter(VCFHeader header,
BCF2FieldEncoder fieldEncoder) |
| Modifier and Type | Method | Description |
|---|---|---|
void |
done(BCF2Encoder encoder,
VariantContext vc) |
|
protected String |
getField() |
|
protected BCF2FieldEncoder |
getFieldEncoder() |
|
protected VCFHeader |
getHeader() |
|
void |
start(BCF2Encoder encoder,
VariantContext vc) |
|
String |
toString() |
protected BCF2FieldWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
protected VCFHeader getHeader()
protected BCF2FieldEncoder getFieldEncoder()
protected String getField()
public void start(BCF2Encoder encoder, VariantContext vc) throws IOException
IOExceptionpublic void done(BCF2Encoder encoder, VariantContext vc) throws IOException
IOException