java.lang.Object
- htsjdk.samtools.cram.encoding.AbstractBitCodec<byte[]>
- - htsjdk.samtools.cram.encoding.ByteArrayStopEncoding.ByteArrayStopCodec

All Implemented Interfaces:: BitCodec<byte[]>

Enclosing class:: ByteArrayStopEncoding

public static class ByteArrayStopEncoding.ByteArrayStopCodec
extends AbstractBitCodec<byte[]>

Constructor Summary

Constructors
Constructor Description

ByteArrayStopCodec(byte stopByte, InputStream inputStream, OutputStream outputStream)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`long`	`numberOfBits(byte[] object)`	Calculate the number of bits that the object would take in bit serialized form.
`byte[]`	`read(BitInputStream bitInputStream)`	Read a single object from the bit stream.
`byte[]`	`read(BitInputStream bitInputStream, int length)`	Read a array of specified length from the bit stream.
`long`	`write(BitOutputStream bitOutputStream, byte[] object)`	Write an object into the bit stream

Methods inherited from class htsjdk.samtools.cram.encoding.AbstractBitCodec
readInto, skip, skip

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ByteArrayStopCodec
```
public ByteArrayStopCodec(byte stopByte,
                          InputStream inputStream,
                          OutputStream outputStream)
```
- Method Detail
  - read
```
public byte[] read(BitInputStream bitInputStream)
            throws IOException
```
    Description copied from interface: BitCodec
    
    Read a single object from the bit stream.
    
    Specified by:
    
    read in interface BitCodec<byte[]>
    
    Specified by:
    
    read in class AbstractBitCodec<byte[]>
    
    Parameters:
    
    bitInputStream - the bit input stream to rad from
    
    Returns:
    
    an object from the stream
    
    Throws:
    
    IOException - as per java IO contract
  - read
```
public byte[] read(BitInputStream bitInputStream,
                   int length)
            throws IOException
```
    Description copied from interface: BitCodec
    
    Read a array of specified length from the bit stream.
    
    Specified by:
    
    read in interface BitCodec<byte[]>
    
    Specified by:
    
    read in class AbstractBitCodec<byte[]>
    
    Parameters:
    
    bitInputStream - the bit input stream to rad from param valueLen the number of elements to read
    
    Returns:
    
    an object from the stream
    
    Throws:
    
    IOException - as per java IO contract
  - write
```
public long write(BitOutputStream bitOutputStream,
                  byte[] object)
           throws IOException
```
    Description copied from interface: BitCodec
    
    Write an object into the bit stream
    
    Specified by:
    
    write in interface BitCodec<byte[]>
    
    Specified by:
    
    write in class AbstractBitCodec<byte[]>
    
    Parameters:
    
    bitOutputStream - the output bit stream to write to
    
    object - the object to write
    
    Returns:
    
    the number of bits written out
    
    Throws:
    
    IOException - as per java IO contract
  - numberOfBits
```
public long numberOfBits(byte[] object)
```
    Description copied from interface: BitCodec
    
    Calculate the number of bits that the object would take in bit serialized form.
    
    Specified by:
    
    numberOfBits in interface BitCodec<byte[]>
    
    Specified by:
    
    numberOfBits in class AbstractBitCodec<byte[]>
    
    Parameters:
    
    object - an object
    
    Returns:
    
    the number of bits

Class ByteArrayStopEncoding.ByteArrayStopCodec

Constructor Summary

Method Summary

Methods inherited from class htsjdk.samtools.cram.encoding.AbstractBitCodec

Methods inherited from class java.lang.Object

Constructor Detail

ByteArrayStopCodec

Method Detail

read

read

write

numberOfBits