CompressionHeader (htsjdk 2.16.1 API)

java.lang.Object
- htsjdk.samtools.cram.structure.CompressionHeader

public class CompressionHeader
extends Object

Field Summary

Fields
Modifier and Type	Field	Description
`boolean`	`APDelta`
`byte[][][]`	`dictionary`
`Map<EncodingKey,EncodingParams>`	`encodingMap`
`Map<Integer,ExternalCompressor>`	`externalCompressors`
`List<Integer>`	`externalIds`
`boolean`	`readNamesIncluded`
`SubstitutionMatrix`	`substitutionMatrix`
`Map<Integer,EncodingParams>`	`tMap`

Constructor Summary

Constructors
Constructor Description

CompressionHeader()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

byte[][] getTagIds(int id)

void read(byte[] data)

byte[] toByteArray()
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

readNamesIncluded
```
public boolean readNamesIncluded
```

APDelta
```
public boolean APDelta
```

encodingMap

public Map<EncodingKey,EncodingParams> encodingMap

tMap

public Map<Integer,EncodingParams> tMap

externalCompressors

public final Map<Integer,ExternalCompressor> externalCompressors

substitutionMatrix

public SubstitutionMatrix substitutionMatrix

externalIds
```
public List<Integer> externalIds
```

dictionary
```
public byte[][][] dictionary
```

Constructor Detail
- CompressionHeader
```
public CompressionHeader()
```

Method Detail

getTagIds
```
public byte[][] getTagIds(int id)
```

read
```
public void read(byte[] data)
```

toByteArray

public byte[] toByteArray()
                   throws IOException

Throws:: IOException