SequenceRegion (htsjdk 2.22.0 API)

java.lang.Object
- htsjdk.tribble.gff.SequenceRegion

All Implemented Interfaces:

Locatable
```
public class SequenceRegion
extends Object
implements Locatable
```
Represents a sequence region feature in a gff3 file. May be linear or circular.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(SequenceRegion other)`
`String`	`getContig()`	Gets the contig name for the contig this is mapped to.
`int`	`getEnd()`
`int`	`getStart()`
`boolean`	`isCircular()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.samtools.util.Locatable
contains, contigsMatch, getLengthOnReference, overlaps, withinDistanceOf

- Method Detail
  - getContig
```
public String getContig()
```
    Description copied from interface: Locatable
    
    Gets the contig name for the contig this is mapped to. May return null if there is no unique mapping.
    
    Specified by:
    
    getContig in interface Locatable
    
    Returns:
    
    name of the contig this is mapped to, potentially null
  - getStart
```
public int getStart()
```
    Specified by:
    
    getStart in interface Locatable
    
    Returns:
    
    1-based start position, undefined if getContig() == null
  - getEnd
```
public int getEnd()
```
    Specified by:
    
    getEnd in interface Locatable
    
    Returns:
    
    1-based closed-ended position, undefined if getContig() == null
  - isCircular
```
public boolean isCircular()
```
  - equals
```
public boolean equals(SequenceRegion other)
```